There are a few good reasons you can't mold Nikko, Tamiya, and other brand's hard bodies and/or lots of other options and that is that they have undercuts, that is, places where form curves under or has a protrusion or incision large enough to catch on the vacuum formed plastic when you try to lift it off. The reason why OP's thing works is because he had to destroy the original mold to get it out. You can't really do that effectively when you're pulling from something harder like a hard body. Look at any lexan shell body you own: they all get wider as they go to the bottom or at least not narrower. This is so they can pull the plastic off of the mold in the factory.
There is a way around the problem of undercuts, which is to make a mulit-part mold that can disassemble inside the cast shell after everything has cooled down. You'd have a keystone piece that you remove that frees up everything else. An Axial rep told me once about his time working for HPI, and how they had such a mold for a Camaro body.
The seam lines where the mold parts meet up will show in the casting so it helps if you've divided up the pieces along panel lines of the real car (not sure if that makes any grammatical sense but I hope the meaning is clear.)
Apparently, manufacturers drill vacuum holes all over the molds in places there they want detail to pick up. For instance that right angle where the windshield meets the hood, or where a bulging fender meets the body, or in the corners of windows so that the plastic picks up the detail there too.
About working with Lexan, Lexan is basically "polycarbonate". There exist generic clones of it just like there are for pharmaceuticals.
A tip I picked up recently was that you should pre-heat the plastic for a little while before you heat it for molding, so as to get the moisture out of it because that kind of plastic is a "hydrophile".
There are a load of other tricks to make this work that professional manufacturers use, that you can learn about on the
www.tk560.com prop-making forums. They also talk about how to build better vacuum forming machines with more effective vacuum pumps and built in heaters.